PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.9.913.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 468aa    MW: 52436.1 Da    PI: 10.0889
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.9.913.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05523321
                   ETTTTEEESSHHHHHHHHH CS
        zf-C2H2  3 CpdCgksFsrksnLkrHir 21
                   C++Cg++F ++  L rH+r
  e_gw1.9.913.1  5 CEKCGETFASRNALFRHLR 23
                   *****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.408335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MTTACEKCGE TFASRNALFR HLRHDDACRM TGEDASTSSA RASTREGVHK TSVGRVFDGL  60
GLSENVDVAR DGNAARASVT RVSSRKRECD MTKDEVRALN ERRRARAAKR KHERQNGEAR  120
AERDVDPASE LWIGGLRGRA GTMKGLRDTM WRAMPANSSI PQPGIKHLKR RGYRREKEWI  180
GYGFVTCRCP AEANALREAM DGKSVQGPDG IVSVLRVLPA ARKRVVASEG EPVPRILAAG  240
EHPDARQIFM AWTARDLEMR ATTRGLDHNA LIEDAKRFAS PYVSLRGVAF DAEATRRLRD  300
ELLRTKWPTQ TQRRSVKSDG YLVLKRETSP RDPYAALKAA CEALMMKADP SFPYDSLAIT  360
KNFISSAHVD RDDKSFQYAM SFGDFTGGGE LCVESRDGAT RWMIDTRERL AKFDGRSVHW  420
VRGYDGDRFS VVWYVNRESN FTAQRFDVDA TFVDEPTPKS SSRCVVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420199.10.0predicted protein
TrEMBLA4S4350.0A4S435_
STRINGA4S4350.0(Ostreococcus lucimarinus CCE9901)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP643233